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A Methodology for Biplots Based on Bootstrapping with R

    1. [1] Universidad de Salamanca

      Universidad de Salamanca

      Salamanca, España

    2. [2] Universidad Adolfo Ibáñez

      Universidad Adolfo Ibáñez

      Santiago, Chile

  • Localización: Revista Colombiana de Estadística, ISSN-e 2389-8976, ISSN 0120-1751, Vol. 37, Nº. 2, 2014, págs. 367-397
  • Idioma: inglés
  • DOI: 10.15446/rce.v37n2spe.47944
  • Títulos paralelos:
    • Una metodología para biplots basada en bootstrapping con R
  • Enlaces
  • Resumen
    • español

      Un biplot es una representación gráfica de datos multivariantes de dos vías basada en marcadores para filas y columnas proporcionada usualmente en un espacio bidimensional. Estos marcadores definen parámetros que ayudan a interpretar bondad de ajuste, calidad de representación y variabilidad y relaciones entre variables. Sin embargo, tales parámetros son estimados puntualmente en el biplot, sin proporcionar información acerca de la precisión de los estimadores. Se propone una metodología gráfica, que puede ser considerada como una versión inferencial de un biplot, basada en intervalos de confianza bootstrap para los parámetros mencionados. La metodología es implementada en un paquete \verb"R" y validada con datos simulados y reales.

    • English

      A biplot is a graphical representation of two-mode multivariate data based on markers for rows and columns often provided in a two-dimensional space. These markers define parameters that help to interpret goodness of fit, quality of the representation and variability and relationships between variables. However, such parameters are estimated as point values by the biplot, thus no information on the accuracy of the corresponding estimators is obtained. We propose a graphical methodology, that may be considered as an inferential version of a biplot, based on bootstrap confidence intervals for the mentioned parameters. We implement our methodology in an \verb"R" package and validate it with simulated and real-world data.

  • Referencias bibliográficas
    • (2012). Adler, D. & Murdoch, D. The rgl R package version 0.92.894: 3D visualization device system (open GL). R project.
    • Amaro, I.,Vicente-Villardón, J.,Galindo, M.. (2004). 'MANOVA\textsc{} biplot for treatment arrays with two factors based on multivariate...
    • Anderson, E.. (1935). 'The irises of the Gaspe peninsula'. Bulletin of the American Iris Society. 59. 2-5
    • Bickel, P.,Krieger, A.. (1989). 'Confidence bands for a distribution function using the bootstrap'. Journal of the American Statistical...
    • Bradu, D.,Gabriel, K.. (1974). 'Simultaneous statistical inference on interactions in two-way analysis of variance'. Journal of the...
    • Bradu, D.,Gabriel, K.. (1978). 'The biplot as a diagnostic tool for models of two-way tables'. Technometrics. 20. 47-68
    • Cárdenas, O.,Galindo, M. P.. (2003). Biplot with External Information based on Generalized Bilinear Models. Council of Scientific and Humanistic...
    • Cárdenas, O.,Galindo, M.,Vicente-Villardón, J.. (2007). 'Biplot methods: Evolution and applications'. Revista Venezolana de Análisis...
    • Carlier, A.,Kroonenberg, P.. (1996). 'Decompositions and biplots in three-way correspondence analysis'. Psychometrika. 61. 355-373
    • Caro-Lopera, F.,Leiva, V.,Balakrishnan, N.. (2012). 'Connection between the Hadamard and matrix products with an application to a matrix-variate...
    • Chatterjee, S.. (1984). 'Variance estimation in factor analysis: An application of the bootstrap'. British Journal of Mathematical...
    • (1999). Chernick, M. Bootstrap Methods: A Practitioner's Guide. Wiley & Sons, New York, US..
    • (2013). Chessel, D., Dufour, A., Dray, S., Jombart, T., Lobry, J., Ollier, S. & Thioulouse, J. The ADE4 R package version 1.5-2: Analysis...
    • Chessel, D.,Dufour, A.,Thioulouse, J.. (2004). 'The ADE4 R package-I: One-table methods'. R Journal. 4. 5-10
    • Choulakian, V.. (1996). 'Generalized bilinear models'. Psychometrika. 61. 271-283
    • Díaz-Faes, A.,González-Albo, B.,Galindo, M.,Bordons, M.. (2013). 'HJ-biplot as tool of matrix inspection for bibliometrical data'....
    • Díaz-García, J.,Galea, M.,Leiva, V.. (2003). 'Influence diagnostics for multivariate elliptic regression linear models'. Communications...
    • Díaz-García, J.,Leiva, V.. (2003). 'Doubly non-central t and F distribution obtained under singular and non-singular elliptic distributions'....
    • Díaz-García, J.,Leiva, V.,Galea, M.. (2002). 'Singular elliptic distribution: Density and applications'. Communications in Statistics:...
    • Daudin, J.,Duby, C.,Trécourt, P.. (1988). 'Stability of principal components studied by the bootstrap method'. Statistics. 19. 241-258
    • (2013). Del Ferraro, M., Kiers, H. & Giordani, P. The ThreeWay R package version 1.1.1: Three-way component analysis. R project.
    • Demey, J.,Vicente-Villardón, J.,Galindo, M.,Zambrano, A.. (2008). 'Identifying molecular markers associated with classifications of genotypes...
    • Denis, J.. (1991). 'Ajustements de modelles lineaires et bilineaires sous constraintes lineaires avec donnes manquantes'. Statistique...
    • Dray, S.,Dufour, A.. (2007). 'The ADE4 package: Implementing the duality diagram for ecologists'. Journal of Statistical Software....
    • Dray, S.,Dufour, A.,Chessel, D.. (2007). 'The ADE4 package-II: Two-table and K-table methods'. R Journal. 7. 47-52
    • Edelman, A.. (1988). 'Eigenvalues and condition numbers of random matrices'. SIAM Journal on Matrix Analysis and Applications. 9....
    • Efron, B.. (1979). 'Bootstrap methods: Another look at the jackknife'. The Annals of Statistics. 7. 1-26
    • Efron, B.. (1987). 'Better bootstrap confidence intervals'. Journal of the American Statistical Association. 82. 171-185
    • Efron, B.. (1993). An Introduction into the Bootstrap. Chapman and Hall. New York.
    • (2014). Egido, J. The dynBiplotGUI R package version 1.0.1: full interactive GUI for dynamic biplot. R project.
    • Falguerolles, A.. (1995). Generalized Bilinear Models and Generalized Biplots: Some Examples. Publications du Laboratoire de Statistique et...
    • (2012). Faria, J. & Demetrio, C. The bpca R package version 1.0-10: Biplot of multivariate data based on principal component analysis....
    • (2013). Frutos, E. & Galindo, M. The GGEBiplotGUI R package version 1.0-6: interactive GGE biplots in R. R project.
    • Frutos, E.,Galindo, M.,Leiva, V.. (2014). 'An interactive biplot implementation in R for modeling genotype-by-environment interaction'....
    • Gabriel, K. G. M. &. Vicente-Villardón, J.. (1998). 'Visualization of Categorical Data'. Academic Press. London.
    • Gabriel, K.. (1971). 'The biplot graphic display of matrices with application to principal component analysis'. Biometrika. 58. 453-467
    • Gabriel, K.,Zamir, S.. (1979). 'Lower rank approximation of matrices by least squares with any choice of weights'. Technometrics....
    • Galindo, M.. (1986). 'An alternative for simultaneous representation: HJ-biplot'. Questíio. 10. 12-23
    • Gallego-Álvarez, I.,Galindo, M.,Rodríguez-Rosa, M.. (2014). 'Analysis of the sustainable society index worldwide: A study from the biplot...
    • García-Sánchez, I.,Frías-Aceituno, J.,Rodríguez-Domínguez, L.. (2013). 'Determinants of corpotate social disclosure in Spanish local governments'....
    • Gauch, H.. (1988). 'Model selection and validation for yield trials with interaction'. Biometrics. 44. 705-715
    • Gifi, A.. (1990). Nonlinear Multivariate Analysis.
    • Gower, J.. (1992). 'Generalized biplots'. Biometrika. 79. 475-493
    • Gower, J.,Gardner-Lubbe, S.,Le-Roux, N.. (2011). Understanding Biplots.
    • Gower, J.,Hand, D.. (1996). Biplots.
    • Gower, J.,Harding, S.. (1988). 'Nonlinear biplots'. Biometrika. 75. 445-455
    • (2013). Graffelman, J. The calibrate R package version 1.7.1: Calibration of scatterplot and biplot axes. R project.
    • Greenacre, M. J.. (1984). Theory and Application of Correspondence Analysis. Academic Press.
    • Greenacre, M. J.. (2010). Biplots in Practice. Publications of BBVA Fundation.
    • (2012). Greenacre, M. J. & Nenadic, O.. The ca R package version 0.53: simple, multiple and joint correspondence analysis.
    • (2012). Grosjean, P. SciViews-R: A GUI API for R. MONS, Belgium.
    • (2013). Hernández, J. & Vicente-Villardón, J. The OrdinalLogisticBiplot R package version 0.2: Ordinal logistic biplots. R project.
    • (2013). Hernández, J. & Vicente-Villardón, J. The NominalLogisticBiplot R package version 0.1: Biplot representations of categorical data....
    • Hernández, S.. (2005). Robust Biplot.
    • Holmes, S.. (1989). 'Using the bootstrap and the RV coefficient in the multivariate context'. Proceedings of the conference on Data...
    • Jambu, M.. (1991). Exploratory and Multivariate Data Analysis. Academic Press. Orlando.
    • Kiers, H.. (2004). 'Bootstrap confidence intervals for three-way methods'. Journal of Chemometrics. 18. 22-36
    • L'Hermier des Plantes, H.. (1976). Structuration Des Tableaux A Trois Indices De La Statistique: Theorie et Application d'une Méthode...
    • La Grange, A.,Le-Roux, N.,Gardner-Lubbe, S.. (2009). 'Biplotgui: Interactive biplots in R'. Journal of Statistical Software. 30. 12-37
    • (2013). La Grange, A., Le-Roux, N., Rousseeuw, P., Ruts, I. & Tukey, J. The biplotGUI R package version 0.0-7: Interactive biplots. R...
    • Lambert, Z.,Wildt, A.,Durand, R.. (1990). 'Assessing sampling variation relative to number-of-factors criteria'. Educational and Psychological...
    • Lebart, L.,Morineau, A.,Piron, M.. (1995). Statistique Exploratoire Multidimensionnelle. Dunod. Paris.
    • Leiva, V.,Marchant, C.,Saulo, H.,Aslam, M.,Rojas, F.. (2014). 'Capability indices for Birnbaum-Saunders processes applied to electronic...
    • Linting, M.,Meulman, J. J.,Groenen, P. J. F.,Van der Kooij, A. J.. (2007). 'Stability of nonlinear principal components analysis. An empirical...
    • Marcenko, V.,Pastur, L.. (1967). 'Distributions of eigenvalues for some sets of random matrices'. Mathematics of the USSR-Sbornik....
    • (2012). Markos, A. The GUI ca R package version 0.1-4: a Tcl/Tk GUI for the functions. R project.
    • Martín-Rodríguez, J.,Galindo, M.,Vicente-Villardón, J.. (2002). 'Comparison and integration of subspaces from a biplot perspective'....
    • McKay, B. D.. (1981). 'The expected eigenvalue distribution of a large regular graph'. Linear Algebra and Applications. 40. 203-216
    • Mendes, S.,Fernández-Gómez, M.,Galindo, M.,Morgado, F.,Maranhão, P.,Azeiteiro, U.,Bacelar-Nicolau, P.. (2009). 'The study of bacterioplankton...
    • Meulman, J. J.. (1982). Homogeneity Analysis of Incomplete Data. DSWO Press.
    • Milan, L.,Whittaker, J.. (1995). 'Application of the parametric bootstrap to models that incorporate a singular value decomposition'....
    • Nenadic, O.,Greenacre, M.. (2007). 'Correspondence analysis in R, with two- and three-dimensional graphics: The ca package'. Journal...
    • (2012). Nieto, A., Baccalá, N., Vicente-Galindo, P. & Galindo, M. The multibiplotGUI R package version 0.0-1: Multibiplot analysis. R...
    • (2013). Oksanen, J., Blanchet, F., Kindt, R., Legendre, P., Minchin, P., O'Hara, B., Simpson, G., Solymos, P., Stevens, M. & Wagner,...
    • Orfao, A.,González, M.,San-Miguel, J.,Ríos, A.,Caballero, M.,Sanz, M.,Calmuntia, M.,Galindo, M.,López-Borrasca, A.. (1988). 'Bone marrow...
    • (2013). R-Team, R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria..
    • Ramírez, G.,Vásquez, M.,Camardiel, A.,Pérez, B.,Galindo, M.. (2005). 'Graphical detection for the multicolinearity by the h-plot of the...
    • Rivas-Gonzalo, J.,Gutiérrez, Y.,Polanco, A.,Hebrero, E.,Vicente-Villardón, J.,Galindo, M.,Santos-Buelga, C.. (1993). 'Biplot analysis...
    • (2015). Sánchez, L., Leiva, V., Caro-Lopera, F. & Cysneiros, F. On matrix-variate Birnbaum-Saunders distributions and their estimation...
    • Sepúlveda, R.,Vicente-Villardón, J.,Galindo, M.. (2008). 'The biplot as a diagnostic tool of local dependence in latent class models:...
    • Stewart, G.. (1980). 'The efficient generation of random orthogonal matrices with application to condition estimators'. SIAM Journal...
    • Ter-Braak, C.. (1986). 'Canonical correspondence analysis: A new eigenvector technique for multivariate direct gradient analysis'....
    • Ter-Braak, C.. (1990). 'Interpreting canonical correlation analysis trough biplot of structure and weights'. Psychometrika. 55. 519-531
    • Ter-Braak, C.,Looman, C.. (1994). 'Biplots in reduced-rank regression'. Biometrical Journal. 36. 983-1003
    • Thioulouse, J.,Dray, S.. (2007). 'Interactive multivariate data analysis in R with the ade4 and ade4TkGUI packages'. Journal of Statistical...
    • (2012). Thioulouse, J. & Dray, S. The ade4TkGUI R package version 0.2-6: ade4 Tcl/Tk graphical user interface. R project.
    • (2012). Tierney, L. The tkrplot R package version 0.0-23: TK Rplot. R project.
    • Timmerman, M.,Kiers, H.,Smilde, A.,Stouten, J.. (2009). 'Bootstrap confidence intervals in multi-level simultaneous component analysis'....
    • Tucker, L.. (1966). 'Some mathematical notes on three-mode factor analysis'. Psychometrika. 31. 279-311
    • Vairinhos, V.. (2003). Development of a System for Data Mining based on Biplot Methods.
    • Vallejo-Arboleda, A.,Vicente-Villardón, J.,Galindo, M.. (2006). 'Canonical STATIS: Biplot analysis of multi-table group structured data...
    • Vallejo-Arboleda, A.,Vicente-Villardón, J.,Galindo, M.,Fernández, M.,Fernández, C.,Bécares, E.. (2008). 'Analysis of time evolution for...
    • Van Ginkel, J. K. H.. (2011). 'Constructing bootstrap confidence intervals for principal component loadings in the presence of missing...
    • (2010). Vicente-Villardón, J. MULTBIPLOT: A Package for Multivariate Analysis using Biplots. Mathlab software.
    • Vicente-Villardón, J.,Galindo, M.,Blázquez, A.. (2006). Logistic Biplots.
    • Viloria, J.,Gil, J.,Durango, D.,García, C.. (2012). 'Physicochemical characterization of propolis from the region of Bajo Cauca Antioqueño...
    • Wachter, K.. (1978). 'The strong limits of random matrix spectra for sample matrices of independent elements'. The Annals of Probability....
    • Yan, W.,Hunt, L.,Sheng, Q.,Szlavnics, Z.. (2000). 'Cultivar evaluation and mega-environment investigation based on GGE biplot'. Crop...
    • Yan, W.,Kang, M.. (2003). GGE Biplot Analysis: A Graphical Tool for Breeders, Geneticists, and Agronomists. CRC Press. Boca Raton.
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