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Bayesian structured antedependence model proposals for longitudinal data

  • Edwin Castillo-Carreno [1] ; Edilberto Cepeda-Cuervo [1] ; Vicente Núñez-Antón [2]
    1. [1] Universidad Nacional de Colombia

      Universidad Nacional de Colombia

      Colombia

    2. [2] Universidad del País Vasco/Euskal Herriko Unibertsitatea

      Universidad del País Vasco/Euskal Herriko Unibertsitatea

      Leioa, España

  • Localización: Sort: Statistics and Operations Research Transactions, ISSN 1696-2281, Vol. 44, Nº. 1, 2020, págs. 171-200
  • Idioma: inglés
  • DOI: 10.2436/20.8080.02.99
  • Enlaces
  • Resumen
    • An important problem in Statistics is the study of longitudinal data taking into account the effect of other explanatory variables, such as treatments and time and, simultaneously, the incorporation into the model of the time dependence between observations on the same individual. The latter is specially relevant in the case of nonstationary correlations, and nonconstant variances for the different time point at which measurements are taken. Antedependence models constitute a well known commonly used set of models that can accommodate this behaviour. These covariance models can include too many parameters and estimation can be a complicated optimization problem requiring the use of complex algorithms and programming. In this paper, a new Bayesian approach to analyse longitudinal data within the context of antedependence models is proposed. This innovative approach takes into account the possibility of having nonstationary correlations and variances, and proposes a robust and computationally efficient estimation method for this type of data. We consider the joint modelling of the mean and covariance structures for the general antedependence model, estimating their parameters in a longitudinal data context. Our Bayesian approach is based on a generalization of the Gibbs sampling and Metropolis-Hastings by blocks algorithm, properly adapted to the antedependence models longitudinal data settings. Finally, we illustrate the proposed methodology by analysing several examples where antedependence models have been shown to be useful: the small mice, the speech recognition and the race data sets.

  • Referencias bibliográficas
    • Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19, 716–723.
    • Baldassi, C. (2017). A method to reduce the rejection rate in Monte Carlo Markov chains. Journal of Statistical Mechanics: Theory and Experiment,...
    • Brown, P.J., Kenward, M.G. and Bassett, E.E. (2001). Bayesian discrimination with longitudinal data. Biostatistics, 2, 417–432.
    • Cepeda-Cuervo, E. (2001). Modelagem da Variabilidade emModelos Lineares Generalizados. Unpublished Math Ph.D. Thesis. Mathematics Institute,...
    • Cepeda-Cuervo, E. (2011). Generalized spatio-temporal models. SORT, 35, 165–178.
    • Cepeda, E.C. and Gamerman, D. (2004). Bayesian modeling of joint regressions for the mean and covariance matrix. Biometrical Journal, 46,...
    • Cepeda-Cuervo, E. and Núñez-Antón, V. (2007). Bayesian joint modelling of the mean and covariance structures for normal longitudinal...
    • Cepeda-Cuervo, E. and Núñez-Antón, V. (2009). Bayesian modelling of the mean and covariance matrix in normal nonlinear models. Journal...
    • Choi, H., Jang, E. and Alemi, A.A. (2018). WAIC, but Why? Generative ensembles for robust anomaly detection. arXiv preprint arXiv:1810.01392.
    • Congdon, P. (2020). Bayesian Hierarchical Models With Applications Using R. Second edition. CRC Press, London.
    • Diggle, P.J., Heagerty, P., Liang, K.-Y. and Zeger, S. (2002). Analysis of Longitudinal Data (2nd edition). Oxford University Press, Oxford.
    • Everitt, B. (1994a). Exploring multivariate data graphically: A brief review with examples. Journal of Applied Statistics, 21, 63–94.
    • Everitt, B. (1994b). A Handbook of Statistical Analyses Using S-Plus. Chapman and Hall, London.
    • Fahrmeir, L., Kneib, T. and Lang, S. (2013). Bayesian multilevel models. In: Scott, M.A., Simonoff, J.S. and Marx. B.D. (eds). The SAGE Handbook...
    • Fitzmaurice, G., Davidian, M., Verbeke, G. and Molenberghs, G. (2009). Longitudinal Data Analysis. CRC Press, New York.
    • Gabriel, K.R. (1962). Ante-dependence analysis of an ordered set of variables. Annals of Mathematical Statistics, 33, 201–212.
    • Gamerman, D. and Lopes, H.F. (2006). Markov Chain Monte Carlo. Stochastic Simulation for Bayesian Inference (2nd edition). CRC Press, New...
    • Gelman, A. (2006). Prior distributions for variance parameters in hierarchical models. Bayesian Analysis, 1, 515–533.
    • Gelman, A., Carlin, J.B., Stern, H.S. and Rubin, D.B., (2014a). Hierarchical Linear Models in Bayesian Data Analysis. Chapman and Hall/CRC...
    • Gelman, A., Carlin, J.B., Stern, H.S. and Rubin, D.B. (2014b). Bayesian Data Analysis, vol. 2. Chapman and Hall/CRC Press, Boca Raton, FL.
    • Gill, J. (2014). Bayesian Hierarchical Models in Bayesian Methods: A Social and Behavioral Sciences Approach. CRC Press, Boca Raton, FL.
    • Hui, S.L. and Berger, J.O. (1983). Empirical Bayes estimation of rates in longitudinal studies. Journal of the American Statistical Association,...
    • Izenman, A.J. and Williams, J.S. (1989). A class of linear spectral models and analyses for the study of longitudinal data. Biometrics, 45,...
    • Jaffrézic, F. and Pletcher, S.D. (2000). Statistical Models for estimating the genetic basis of repeated measures and other function-valued...
    • Jaffrézic, F., White, I.M.S., Thompson. R. and Visscher, P.M. (2002). Contrasting models for lactation curve analysis. Journal of Dairy...
    • Jiang, J., Zhang, Q., Ma, L., Li, J., Wang, Z. and Liu, J.-F. (2015). Joint prediction of multiple quantitative traits using a Bayesian multivariate...
    • Laird, N.M. (1988). Missing data in longitudinal studies. Statistics in Medicine, 7, 305–315.
    • Macchiavelli, R.E. and Arnold, S.F. (1994). Variable-order antedependence models. Communications in Statistics Theory and Methods, 23, 2683–2699.
    • Núñez-Antón, V. and Woodworth, G.G. (1994). Analysis of longitudinal data with unequally spaced observations and time-dependent correlated...
    • Núñez-Antón, V. and Zimmerman, D.L. (2001). Modelización de datos longitudinales con estructuras de covarianza no estacionarias: Modelos...
    • Piironen, J. and Vehtari, A. (2017). Comparison of Bayesian predictive methods for model selection. Statistics and Computing, 27, 711–735.
    • Pourahmadi, M. (1999). Joint mean-covariance models with applications to longitudinal data: Unconstrained parameterisation. Biometrika, 86,...
    • R Core Team (2013). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL...
    • Schwarz, G.E. (1978). Estimating the dimension of a model. Annals of Statistics, 6, 461–464.
    • Spiegelhalter, D.J., Best, N.G., Carlin, B.P. and Van der Linde, A. (2002). Bayesian measures of model complexity and fit (with discussion)....
    • Spiegelhalter, D.J., Thomas, A., Best, N. and Lunn, D. (2003). WinBUGS User Manual. MRC Biostatistics Unit, Cambridge, UK. www.mrc-bsu.cam.ac.uk/bugs.
    • Tyler, R.S., Abbas, P., Tye-Murray, N., Gantz, B.J., Knutson, J.F., McCabe, B.F., Lansing, C., Brown, C.,
    • Woodworth, G., Hinrichs, J. and Kuk, F. (1988). Evaluation of five different cochlear implant designs: Audiologic assessment and predictors...
    • Vehtari, A., Gelman, A. and Gabry, J. (2017). Practical Bayesian model evaluation using leave-one-outcross-validation and WAIC. Statistics...
    • Ware, J.H. (1985). Linear models for the analysis of longitudinal studies. The American Statistician, 39, 95–101.
    • Watanabe, S. (2010). Asymptotic equivalence of Bayes cross validation and widely applicable information criterion in singular learning theory....
    • Weiss, R.E. (2005). Modeling Longitudinal Data. Springer, New York.
    • Yang, W. and Tempelman, R.J. (2012). A Bayesian Antedependence Model for Whole Genome Prediction. Genetics, 190, 1491–1501.
    • Zimmerman, D.L. (2000). Viewing the correlation structure of longitudinal data through a PRISM. The American Statistician, 54, 310–318.
    • Zimmerman, D.L. and Núñez-Antón, V. (1997). Modelling longitudinal and spatially correlated data: Antedependence models for longitudinal...
    • Methods, Applications, and Future Directions. Springer-Verlag, New York. Lecture Notes in Statistics No. 122, 63–76.
    • Zimmerman, D.L and Núñez-Antón, V. (2010). Antedependence Models for Longitudinal Data. CRC Press, New York.
    • Zimmerman, D.L., Núñez-Antón, V. and El Barmi, H. (1998). Computational aspects of likelihood-based estimation of first-order antedependence...

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